JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1697.1 ARF4 Zea mays B3 ARF
MA1697.2 ARF4 Zea mays B3 ARF
MA1698.1 ARF7 Zea mays B3 ARF
MA1698.2 ARF7 Zea mays B3 ARF
MA1699.1 ceh-38 Caenorhabditis elegans Homeo domain factors HD-CUT
MA1699.2 ceh-38 Caenorhabditis elegans Homeo domain factors HD-CUT
MA1700.1 Clamp Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1701.1 elt-2 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA1701.2 elt-2 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA1702.1 Pdp1 Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
Showing 10 profiles of page 322 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.