JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1646.1 OSR2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1646.2 OSR2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1647.1 PRDM4 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1647.2 Prdm4 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1647.3 Prdm4 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1648.1 TCF12 Homo sapiens Basic helix-loop-helix factors (bHLH) E2A
MA1648.2 TCF12 Homo sapiens Basic helix-loop-helix factors (bHLH) E2A
MA1649.1 ZBTB12 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1649.2 ZBTB12 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1650.1 ZBTB14 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 312 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.