JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1641.1 MYF5 Homo sapiens Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA1641.2 MYF5 Homo sapiens Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA1642.1 NEUROG2 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1642.2 NEUROG2 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1643.1 NFIB Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA1643.2 NFIB Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA1644.1 NFYC Homo sapiens Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA1644.2 NFYC Homo sapiens Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA1645.1 NKX2-2 Homo sapiens Homeo domain factors NK
MA1645.2 NKX2-2 Homo sapiens Homeo domain factors NK
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.