JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1606.2 Foxf1 Mus musculus Fork head/winged helix factors FOX
MA1607.1 Foxl2 Mus musculus Fork head/winged helix factors FOX
MA1607.2 Foxl2 Mus musculus Fork head/winged helix factors FOX
MA1608.1 Isl1 Mus musculus Homeo domain factors HD-LIM
MA1608.2 Isl1 Mus musculus Homeo domain factors HD-LIM
MA1615.1 Plagl1 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1615.2 Plagl1 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1616.1 Prdm15 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1616.2 Prdm15 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1618.1 Ptf1a Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
Showing 10 profiles of page 306 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.