JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1600.2 ZNF684 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1601.1 ZNF75D Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1601.2 ZNF75D Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1602.1 ZSCAN29 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1602.2 ZSCAN29 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1603.1 Dmrt1 Mus musculus DM-type intertwined zinc finger factors DMRT factors
MA1603.2 Dmrt1 Mus musculus DM-type intertwined zinc finger factors DMRT factors
MA1604.1 Ebf2 Mus musculus Rel homology region (RHR) factors Early B-Cell Factor-related factors
MA1604.2 Ebf2 Mus musculus Rel homology region (RHR) factors Early B-Cell Factor-related factors
MA1606.1 Foxf1 Mus musculus Fork head/winged helix factors FOX
Showing 10 profiles of page 305 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.