JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1592.1 ZNF274 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1592.2 ZNF274 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1593.1 ZNF317 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1593.2 ZNF317 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1594.1 ZNF382 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1596.1 ZNF460 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1597.1 ZNF528 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1599.1 ZNF682 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1599.2 ZNF682 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1600.1 ZNF684 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 304 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.