JASPAR CORE

  1. Home
  2. Collection CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1583.2 ZFP57 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1584.1 ZIC5 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1584.2 ZIC5 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1585.1 ZKSCAN1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1585.2 ZKSCAN1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1587.1 ZNF135 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1588.1 ZNF136 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1589.1 ZNF140 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1589.2 ZNF140 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1589.3 ZNF140 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 303 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.