JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1566.2 TBX3 Homo sapiens T-Box factors TBX2-related factors
MA1566.3 TBX3 Homo sapiens T-Box factors TBX2-related factors
MA1567.1 TBX6 Homo sapiens T-Box factors TBX6-related factors
MA1567.2 Tbx6 Mus musculus T-Box factors TBX6-related factors
MA1567.3 Tbx6 Mus musculus T-Box factors TBX6-related factors
MA1568.1 TCF21 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1568.2 TCF21 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1569.1 TFAP2E Homo sapiens Basic helix-span-helix factors (bHSH) AP-2
MA1569.2 TFAP2E Homo sapiens Basic helix-span-helix factors (bHSH) AP-2
MA1570.1 TFAP4 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.