JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1537.2 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1538.1 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1539.1 NR2F6 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1540.1 NR5A1 Homo sapiens Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA1540.2 NR5A1 Mus musculus Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA1540.3 Nr5a1 Mus musculus Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA1541.1 NR6A1 Homo sapiens Nuclear receptors with C4 zinc fingers GCNF-related receptors (NR6)
MA1541.2 NR6A1 Homo sapiens Nuclear receptors with C4 zinc fingers GCNF-related receptors (NR6)
MA1542.1 OSR1 Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1542.2 OSR1 Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 295 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.