JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1522.2 MAZ Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1523.1 MSANTD3 Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA1523.2 MSANTD3 Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA1524.1 MSGN1 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1524.2 Msgn1 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1524.3 Msgn1 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1525.1 NFATC4 Homo sapiens Rel homology region (RHR) factors NFAT-related factors
MA1525.2 NFATC4 Homo sapiens Rel homology region (RHR) factors NFAT-related factors
MA1525.3 NFATC4 Homo sapiens Rel homology region (RHR) factors NFAT-related factors
MA1527.1 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.