JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1518.1 LHX1 Homo sapiens Homeo domain factors HD-LIM
MA1518.2 Lhx1 Mus musculus Homeo domain factors HD-LIM
MA1518.3 Lhx1 Mus musculus Homeo domain factors HD-LIM
MA1519.1 LHX5 Homo sapiens Homeo domain factors HD-LIM
MA1519.2 LHX5 Homo sapiens Homeo domain factors HD-LIM
MA1520.1 MAF Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1520.2 MAF Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1521.1 MAFA Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1521.2 MAFA Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1522.1 MAZ Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 291 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.