JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1455.1 dmrt99B Drosophila melanogaster DM-type intertwined zinc finger factors DMRT factors
MA1455.2 dmrt99B Drosophila melanogaster DM-type intertwined zinc finger factors DMRT factors
MA1456.1 Dref Drosophila melanogaster C2H2 zinc finger factors BED zinc finger factors
MA1456.2 Dref Drosophila melanogaster C2H2 zinc finger factors BED zinc finger factors
MA1457.1 grh Drosophila melanogaster Grainyhead domain factors Grainyhead-related factors
MA1457.2 grh Drosophila melanogaster Grainyhead domain factors Grainyhead-related factors
MA1458.1 Hsf Drosophila melanogaster Heat shock factors HSF factors
MA1458.2 Hsf Drosophila melanogaster Heat shock factors HSF factors
MA1459.1 M1BP Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1459.2 M1BP Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 280 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.