JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1427.2 NAC028 Arabidopsis thaliana GCM domain factors NAC
MA1427.3 NAC028 Arabidopsis thaliana GCM domain factors NAC
MA1428.1 TCP8 Arabidopsis thaliana TCP
MA1428.2 TCP8 Arabidopsis thaliana TCP
MA1430.1 TB1 Oryza sativa TCP
MA1430.2 TB1 Oryza sativa TCP
MA1431.1 rst2 Schizosaccharomyces pombe C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1431.2 rst2 Schizosaccharomyces pombe C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1432.1 cre-1 Neurospora crassa C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1432.2 cre-1 Neurospora crassa C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 276 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.