JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1418.2 IRF3 Homo sapiens Tryptophan cluster factors Interferon-regulatory factors
MA1419.1 IRF4 Homo sapiens Tryptophan cluster factors Interferon-regulatory factors
MA1419.2 IRF4 Homo sapiens Tryptophan cluster factors Interferon-regulatory factors
MA1420.1 IRF5 Homo sapiens Tryptophan cluster factors Interferon-regulatory factors
MA1421.1 TCF7L1 Homo sapiens High-mobility group (HMG) domain factors TCF-7-related factors
MA1424.1 ERF019 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1424.2 ERF019 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1425.1 HYH Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group H
MA1425.2 HYH Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group H
MA1427.1 NAC028 Arabidopsis thaliana GCM domain factors NAC
Showing 10 profiles of page 275 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.