JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1412.1 TSAR2 Medicago truncatula Basic helix-loop-helix factors (bHLH) bHLH
MA1412.2 TSAR2 Medicago truncatula Basic helix-loop-helix factors (bHLH) bHLH
MA1414.1 E2FA Arabidopsis thaliana Fork head/winged helix factors E2F
MA1414.2 E2FA Arabidopsis thaliana Fork head/winged helix factors E2F
MA1415.1 REF6 Arabidopsis thaliana C2H2 zinc finger factors Jumonji
MA1415.2 REF6 Arabidopsis thaliana C2H2 zinc finger factors Jumonji
MA1416.1 RAMOSA1 Zea mays C2H2 zinc finger factors C2H2
MA1417.1 O2 Zea mays Basic leucine zipper factors (bZIP) Group C
MA1417.2 O2 Zea mays Basic leucine zipper factors (bZIP) Group C
MA1418.1 IRF3 Homo sapiens Tryptophan cluster factors Interferon-regulatory factors
Showing 10 profiles of page 274 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.