JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1407.1 bZIP14 Phaeodactylum tricornutum Basic leucine zipper factors (bZIP) Group A
MA1407.2 bZIP14 Phaeodactylum tricornutum Basic leucine zipper factors (bZIP) Group A
MA1408.1 FaEOBII Fragaria x ananassa Tryptophan cluster factors MYB-related
MA1408.2 FaEOBII Fragaria x ananassa Tryptophan cluster factors MYB-related
MA1409.1 OsRR22 Oryza sativa Tryptophan cluster factors GARP_ARR-B
MA1409.2 OsRR22 Oryza sativa Tryptophan cluster factors GARP_ARR-B
MA1410.1 StBRC1 Solanum lycopersicum TCP
MA1410.2 StBRC1 Solanum lycopersicum TCP
MA1411.1 TSAR1 Medicago truncatula Basic helix-loop-helix factors (bHLH) bHLH
MA1411.2 TSAR1 Medicago truncatula Basic helix-loop-helix factors (bHLH) bHLH
Showing 10 profiles of page 273 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.