JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1400.2 AT1G19000 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1401.1 RVE7 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1401.2 RVE7 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1402.1 BPC6 Arabidopsis thaliana BBR/BPC
MA1403.1 BPC5 Arabidopsis thaliana BBR/BPC
MA1404.1 BPC1 Arabidopsis thaliana BBR/BPC
MA1405.1 SIZF2 Solanum lycopersicum C2H2 zinc finger factors C2H2
MA1405.2 SIZF2 Solanum lycopersicum C2H2 zinc finger factors C2H2
MA1406.1 ATHB-4 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1406.2 ATHB-4 Arabidopsis thaliana Homeo domain factors HD-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.