JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1381.2 AT3G46070 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA1382.1 FAR1 Arabidopsis thaliana GCM domain factors FRS/FRF
MA1382.2 FAR1 Arabidopsis thaliana GCM domain factors FRS/FRF
MA1383.1 KAN2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1383.2 KAN2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1384.1 PHL7 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1385.1 AT2G40260 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1385.2 AT2G40260 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1386.1 HHO3 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1386.2 HHO3 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
Showing 10 profiles of page 268 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.