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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1375.2 ANL2 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1376.1 DEAR3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1376.2 DEAR3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1377.1 PLT1 Arabidopsis thaliana AP2/EREBP AP2
MA1377.2 PLT1 Arabidopsis thaliana AP2/EREBP AP2
MA1378.1 AIL6 Arabidopsis thaliana AP2/EREBP AP2
MA1378.2 AIL6 Arabidopsis thaliana AP2/EREBP AP2
MA1379.1 SOL1 Arabidopsis thaliana CPP
MA1380.1 TCX6 Arabidopsis thaliana CPP
MA1381.1 AT3G46070 Arabidopsis thaliana C2H2 zinc finger factors C2H2
Showing 10 profiles of page 267 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.