JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1370.1 IDD5 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1370.2 IDD5 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1371.1 IDD4 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1371.2 IDD4 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1372.1 ZAT10 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA1372.2 ZAT10 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA1373.1 GAF1 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1374.1 IDD7 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1374.2 IDD7 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1375.1 ANL2 Arabidopsis thaliana Homeo domain factors HD-ZIP
Showing 10 profiles of page 266 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.