JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1349.1 BZIP16 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA1349.2 BZIP16 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA1350.1 BZIP42 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group S
MA1351.1 GBF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA1351.2 GBF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA1351.3 GBF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA1352.1 TRP1 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1353.1 AT1G72740 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1353.2 AT1G72740 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1354.1 AT4G12670 Arabidopsis thaliana Tryptophan cluster factors MYB-related
Showing 10 profiles of page 262 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.