JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1311.1 WRKY28 Arabidopsis thaliana GCM domain factors WRKY
MA1311.2 WRKY28 Arabidopsis thaliana GCM domain factors WRKY
MA1311.3 WRKY28 Arabidopsis thaliana GCM domain factors WRKY
MA1312.1 WRKY47 Arabidopsis thaliana GCM domain factors WRKY
MA1312.2 WRKY47 Arabidopsis thaliana GCM domain factors WRKY
MA1313.1 WRKY7 Arabidopsis thaliana GCM domain factors WRKY
MA1313.2 WRKY7 Arabidopsis thaliana GCM domain factors WRKY
MA1314.1 WRKY14 Arabidopsis thaliana GCM domain factors WRKY
MA1314.2 WRKY14 Arabidopsis thaliana GCM domain factors WRKY
MA1315.1 WRKY24 Arabidopsis thaliana GCM domain factors WRKY
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Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.