JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0090.4 TEAD1 Homo sapiens TEA domain factors TEF-1-related factors
MA0091.1 TAL1::TCF3 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related::E2A
MA0091.2 TAL1::TCF3 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related::E2A
MA0092.1 Hand1::Tcf3 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related::E2A
MA0092.2 Hand1::Tcf3 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related::E2A
MA0093.1 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0093.2 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0093.3 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0093.4 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0094.1 Ubx Drosophila melanogaster Homeo domain factors HOX
Showing 10 profiles of page 24 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.