JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1197.1 CAMTA1 Arabidopsis thaliana GCM domain factors CAMTA
MA1197.2 CAMTA1 Arabidopsis thaliana GCM domain factors CAMTA
MA1198.1 HAT2 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1198.2 HAT2 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1199.1 AGL16 Arabidopsis thaliana MADS box factors Type II
MA1203.1 AGL63 Arabidopsis thaliana MADS box factors Type II
MA1204.1 AGL13 Arabidopsis thaliana MADS box factors Type II
MA1205.1 AGL6 Arabidopsis thaliana MADS box factors Type II
MA1206.1 ARF2 Arabidopsis thaliana B3 ARF
MA1206.2 ARF2 Arabidopsis thaliana B3 ARF
Showing 10 profiles of page 235 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.