JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1166.2 PHL12 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1167.1 EFM Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1167.2 EFM Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1168.1 MYR2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1168.2 MYR2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1169.1 MYB105 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1170.1 MYB118 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1170.2 MYB118 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1171.1 MYB52 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1171.2 MYB52 Arabidopsis thaliana Tryptophan cluster factors MYB
Showing 10 profiles of page 229 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.