JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1151.1 RORC Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1151.2 RORC Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1152.1 SOX15 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA1152.2 SOX15 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA1153.1 Smad4 Mus musculus SMAD/NF-1 DNA-binding domain factors SMAD factors
MA1153.2 Smad4 Mus musculus SMAD/NF-1 DNA-binding domain factors SMAD factors
MA1154.1 ZNF282 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1154.2 ZNF282 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1155.1 ZSCAN4 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1156.1 JKD Arabidopsis thaliana C2H2 zinc finger factors IDD
Showing 10 profiles of page 226 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.