JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1111.1 NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1111.2 NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1112.1 NR4A1 Homo sapiens Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA1112.2 NR4A1 Homo sapiens Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA1112.3 NR4A1 Homo sapiens Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA1113.1 PBX2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA1113.2 PBX2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA1113.3 PBX2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA1114.1 PBX3 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA1114.2 PBX3 Homo sapiens Homeo domain factors TALE-type homeo domain factors
Showing 10 profiles of page 218 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.