JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1074.2 UNE10 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1075.1 WRKY12 Arabidopsis thaliana GCM domain factors WRKY
MA1076.1 WRKY15 Arabidopsis thaliana GCM domain factors WRKY
MA1076.2 WRKY15 Arabidopsis thaliana GCM domain factors WRKY
MA1076.3 WRKY15 Arabidopsis thaliana GCM domain factors WRKY
MA1077.1 WRKY18 Arabidopsis thaliana GCM domain factors WRKY
MA1077.2 WRKY18 Arabidopsis thaliana GCM domain factors WRKY
MA1078.1 WRKY2 Arabidopsis thaliana GCM domain factors WRKY
MA1078.2 WRKY2 Arabidopsis thaliana GCM domain factors WRKY
MA1079.1 WRKY21 Arabidopsis thaliana GCM domain factors WRKY
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Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.