JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1059.2 SPL5 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA1059.3 SPL5 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA1060.1 SPL7 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA1060.2 SPL7 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA1061.1 SPT Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1061.2 SPT Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1062.1 TCP15 Arabidopsis thaliana TCP
MA1062.2 TCP15 Arabidopsis thaliana TCP
MA1062.3 TCP15 Arabidopsis thaliana TCP
MA1063.1 TCP19 Arabidopsis thaliana TCP
Showing 10 profiles of page 207 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.