JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1047.1 TGA5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1047.2 TGA5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1047.3 TGA5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1049.1 ERF094 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1049.2 ERF094 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1050.1 OsI_08196 Oryza sativa Indica Group TCP
MA1051.1 RAP2-3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1053.1 ERF109 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1054.1 ARALYDRAFT_897773 Arabidopsis lyrata subsp. lyrata TCP
MA1054.2 ARALYDRAFT_897773 Arabidopsis lyrata subsp. lyrata TCP
Showing 10 profiles of page 205 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.