JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1026.2 ATHB-15 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1026.3 ATHB-15 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1027.1 KAN1 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1027.2 KAN1 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1028.1 KAN4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1030.1 P0510F09.23 Oryza sativa Japonica Group Tryptophan cluster factors MYB
MA1030.2 P0510F09.23 Oryza sativa Japonica Group Tryptophan cluster factors MYB
MA1031.1 OJ1581_H09.2 Oryza sativa Japonica Group TCP
MA1031.2 OJ1581_H09.2 Oryza sativa Japonica Group TCP
MA1032.1 DREB1G Oryza sativa Japonica Group AP2/EREBP ERF/DREB
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.