JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1021.1 PHYPADRAFT_48267 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA1021.2 PHYPADRAFT_48267 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA1022.1 PHYPADRAFT_38837 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA1022.2 PHYPADRAFT_38837 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA1023.1 PHYPADRAFT_28324 Physcomitrium patens AP2/EREBP ERF/DREB
MA1024.1 HAT1 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1024.2 HAT1 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1025.1 HBI1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1025.2 HBI1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1026.1 ATHB-15 Arabidopsis thaliana Homeo domain factors HD-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.