JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1015.2 GATA12 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1016.1 GATA15 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1016.2 GATA15 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1017.1 GATA8 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1017.2 GATA8 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1018.1 GATA9 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1018.2 GATA9 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1019.1 Glyma19g26560.1 Glycine max TCP
MA1019.2 Glyma19g26560.1 Glycine max TCP
MA1020.1 GT-1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
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Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.