JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1008.2 PHYPADRAFT_182268 Physcomitrium patens AP2/EREBP ERF/DREB
MA1009.1 ARF3 Arabidopsis thaliana B3 ARF
MA1010.1 PHYPADRAFT_64121 Physcomitrium patens AP2/EREBP ERF/DREB
MA1010.2 PHYPADRAFT_64121 Physcomitrium patens AP2/EREBP ERF/DREB
MA1011.1 PHYPADRAFT_72483 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA1011.2 PHYPADRAFT_72483 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA1012.1 AGL27 Arabidopsis thaliana MADS box factors Type II
MA1013.1 GATA10 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1014.1 GATA11 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1015.1 GATA12 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
Showing 10 profiles of page 199 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.