JASPAR CORE

  1. Home
  2. Collection CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0984.1 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0984.2 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0986.1 DREB2C Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0987.1 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0987.2 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0988.1 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA0988.2 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA0989.1 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0989.2 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0990.1 HDG11 Arabidopsis thaliana Homeo domain factors HD-ZIP
Showing 10 profiles of page 195 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.