JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0973.1 CDF2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0973.2 CDF2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.1 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.2 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.3 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0975.1 CRF2 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.1 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.2 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.3 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0977.1 DOF2.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
Showing 10 profiles of page 193 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.