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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0950.1 ATHB-12 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0951.1 ATHB-16 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0952.1 ATHB-51 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0953.1 ATHB-6 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0953.2 ATHB-6 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.1 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.2 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.3 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0955.1 POPTR_0002s00440g Populus trichocarpa C3H(C),C2HC zinc-fingers like factors SBP
MA0955.2 POPTR_0002s00440g Populus trichocarpa C3H(C),C2HC zinc-fingers like factors SBP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.