JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0938.2 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0938.3 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0939.1 NAC079 Arabidopsis thaliana GCM domain factors NAC
MA0940.1 AP1 Arabidopsis thaliana MADS box factors Type II
MA0941.1 ABF2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0941.2 ABF2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0942.1 ARF1 Arabidopsis thaliana B3 ARF
MA0942.2 ARF1 Arabidopsis thaliana B3 ARF
MA0943.1 ARF5 Arabidopsis thaliana B3 ARF
MA0943.2 ARF5 Arabidopsis thaliana B3 ARF
Showing 10 profiles of page 187 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.