JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0930.3 ABF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0931.1 ABI5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0931.2 ABI5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0932.1 AHL12 Arabidopsis thaliana A.T hook factors AHL
MA0933.1 AHL20 Arabidopsis thaliana A.T hook factors AHL
MA0934.1 AHL25 Arabidopsis thaliana A.T hook factors AHL
MA0935.1 NAC025 Arabidopsis thaliana GCM domain factors NAC
MA0936.1 NAC046 Arabidopsis thaliana GCM domain factors NAC
MA0937.1 NAC055 Arabidopsis thaliana GCM domain factors NAC
MA0938.1 NAC058 Arabidopsis thaliana GCM domain factors NAC
Showing 10 profiles of page 186 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.