JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0925.1 sma-4 Caenorhabditis elegans SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0925.2 sma-4 Caenorhabditis elegans SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0926.1 unc-86 Caenorhabditis elegans Homeo domain factors POU domain factors
MA0927.1 vab-7 Caenorhabditis elegans Homeo domain factors HOX
MA0928.1 zfh-2 Caenorhabditis elegans Homeo domain factors HD-ZF factors
MA0928.2 zfh-2 Caenorhabditis elegans Homeo domain factors HD-ZF factors
MA0929.1 NCU00019 Neurospora crassa Fork head/winged helix factors FOX
MA0929.2 NCU00019 Neurospora crassa Fork head/winged helix factors FOX
MA0930.1 ABF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0930.2 ABF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
Showing 10 profiles of page 185 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.