JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0913.3 HOXD9 Homo sapiens Homeo domain factors HOX
MA0914.1 ISL2 Homo sapiens Homeo domain factors HD-LIM
MA0914.2 ISL2 Homo sapiens Homeo domain factors HD-LIM
MA0915.1 dve Drosophila melanogaster Homeo domain factors HD-CUT
MA0915.2 dve Drosophila melanogaster Homeo domain factors HD-CUT
MA0916.1 Ets21C Drosophila melanogaster Tryptophan cluster factors Ets-related
MA0917.1 gcm2 Drosophila melanogaster GCM domain factors GCM
MA0918.1 unc-62 Caenorhabditis briggsae Homeo domain factors TALE-type homeo domain factors
MA0918.2 unc-62 Caenorhabditis briggsae Homeo domain factors TALE-type homeo domain factors
MA0919.1 dsc-1 Caenorhabditis briggsae Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 183 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.