JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0866.1 SOX21 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0867.1 SOX4 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0867.2 SOX4 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0867.3 SOX4 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0868.1 SOX8 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0868.2 SOX8 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0868.3 SOX8 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0869.1 Sox11 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0869.2 Sox11 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0869.3 Sox11 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.