JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0788.1 POU3F3 Homo sapiens Homeo domain factors POU domain factors
MA0789.1 POU3F4 Homo sapiens Homeo domain factors POU domain factors
MA0790.1 POU4F1 Homo sapiens Homeo domain factors POU domain factors
MA0790.2 POU4F1 Homo sapiens Homeo domain factors POU domain factors
MA0791.1 POU4F3 Homo sapiens Homeo domain factors POU domain factors
MA0791.2 POU4F3 Homo sapiens Homeo domain factors POU domain factors
MA0792.1 POU5F1B Homo sapiens Homeo domain factors POU domain factors
MA0793.1 POU6F2 Homo sapiens Homeo domain factors POU domain factors
MA0793.2 POU6F2 Homo sapiens Homeo domain factors POU domain factors
MA0794.1 PROX1 Homo sapiens Homeo domain factors HD-PROS factors
Showing 10 profiles of page 158 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.