JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0782.3 PKNOX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0783.1 PKNOX2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0784.1 POU1F1 Homo sapiens Homeo domain factors POU domain factors
MA0784.2 POU1F1 Homo sapiens Homeo domain factors POU domain factors
MA0784.3 POU1F1 Homo sapiens Homeo domain factors POU domain factors
MA0785.1 POU2F1 Homo sapiens Homeo domain factors POU domain factors
MA0785.2 POU2F1 Homo sapiens Homeo domain factors POU domain factors
MA0786.1 POU3F1 Homo sapiens Homeo domain factors POU domain factors
MA0786.2 POU3F1 Homo sapiens Homeo domain factors POU domain factors
MA0787.1 POU3F2 Homo sapiens Homeo domain factors POU domain factors
Showing 10 profiles of page 157 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.