JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0766.1 GATA5 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0766.2 GATA5 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0766.3 GATA5 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0767.1 GCM2 Homo sapiens GCM domain factors GCM
MA0767.2 GCM2 Homo sapiens GCM domain factors GCM
MA0768.1 LEF1 Homo sapiens High-mobility group (HMG) domain factors TCF-7-related factors
MA0768.2 Lef1 Mus musculus High-mobility group (HMG) domain factors TCF-7-related factors
MA0768.3 Lef1 Mus musculus High-mobility group (HMG) domain factors TCF-7-related factors
MA0769.1 Tcf7 Mus musculus High-mobility group (HMG) domain factors TCF-7-related factors
MA0769.2 TCF7 Homo sapiens High-mobility group (HMG) domain factors TCF-7-related factors
Showing 10 profiles of page 154 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.