JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0754.2 CUX1 Homo sapiens Homeo domain factors HD-CUT
MA0754.3 CUX1 Homo sapiens Homeo domain factors HD-CUT
MA0755.1 CUX2 Homo sapiens Homeo domain factors HD-CUT
MA0755.2 CUX2 Homo sapiens Homeo domain factors HD-CUT
MA0756.1 ONECUT2 Homo sapiens Homeo domain factors HD-CUT
MA0756.2 ONECUT2 Homo sapiens Homeo domain factors HD-CUT
MA0756.3 ONECUT2 Homo sapiens Homeo domain factors HD-CUT
MA0757.1 ONECUT3 Homo sapiens Homeo domain factors HD-CUT
MA0757.2 ONECUT3 Homo sapiens Homeo domain factors HD-CUT
MA0758.1 E2F7 Homo sapiens Fork head/winged helix factors E2F
Showing 10 profiles of page 151 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.