JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0716.1 PRRX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0716.2 PRRX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0717.1 RAX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0717.2 RAX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0718.1 RAX Homo sapiens Homeo domain factors Paired-related HD factors
MA0718.2 RAX Homo sapiens Homeo domain factors Paired-related HD factors
MA0719.1 RHOXF1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0719.2 RHOXF1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0720.1 Shox2 Mus musculus Homeo domain factors Paired-related HD factors
MA0720.2 Shox2 Mus musculus Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 143 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.