JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0684.3 RUNX3 Homo sapiens Runt domain factors Runt-related factors
MA0685.1 SP4 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0685.2 SP4 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0686.1 SPDEF Homo sapiens Tryptophan cluster factors Ets-related
MA0686.2 SPDEF Homo sapiens Tryptophan cluster factors Ets-related
MA0687.1 SPIC Homo sapiens Tryptophan cluster factors Ets-related
MA0687.2 SPIC Homo sapiens Tryptophan cluster factors Ets-related
MA0688.1 TBX2 Homo sapiens T-Box factors TBX2-related factors
MA0688.2 TBX2 Homo sapiens T-Box factors TBX2-related factors
MA0689.1 TBX20 Homo sapiens T-Box factors TBX1-related factors
Showing 10 profiles of page 136 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.