JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0591.1 Bach1::Mafk Mus musculus Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0591.2 Bach1::Mafk Mus musculus Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0592.1 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.2 Esrra Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.3 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.4 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0593.1 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0593.2 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0594.1 Hoxa9 Mus musculus Homeo domain factors HOX
MA0594.2 HOXA9 Homo sapiens Homeo domain factors HOX
Showing 10 profiles of page 116 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.