JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0575.1 MYB77 Arabidopsis thaliana Tryptophan cluster factors MYB
MA0575.2 MYB77 Arabidopsis thaliana Tryptophan cluster factors MYB
MA0576.1 RAX3 Arabidopsis thaliana Tryptophan cluster factors MYB
MA0576.2 RAX3 Arabidopsis thaliana Tryptophan cluster factors MYB
MA0577.1 SPL3 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA0577.2 SPL3 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA0577.3 SPL3 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA0577.4 SPL3 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA0578.1 SPL8 Arabidopsis thaliana C3H(C),C2HC zinc-fingers like factors SBP
MA0579.1 CDC5 Arabidopsis thaliana Tryptophan cluster factors MYB-related
Showing 10 profiles of page 113 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.